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GI和GII型诺如病毒双重荧光RT-PCR法检测

Detection of norovirus genogroup I and II with Allglo probe double fluorescent RT-PCR

  • 摘要: 目的 建立应用Allglo探针同时检测GI和GII型诺如病毒的双重荧光反转录-聚合酶链反应(RT-PCR)方法。方法 设计针对GI和GII型诺如病毒开放阅读框架ORF1及ORF2为目的基因的引物和Allglo探针,优化最佳反应条件,建立一步法荧光RT-PCR快速检测反应体系;对该方法的特异性、抗干扰性、灵敏度进行评估,对96份临床粪便标本进行检测、测序分析。结果 该方法特异性强,与轮状病毒、扎如病毒、星状病毒、腺病毒同时检测无交叉反应;同一体系下GI或GII型诺如病毒相互之间没有干扰;最低检测限均为10 copies/μL;对96份临床粪便标本进行检测,结果与单重荧光RT-PCR方法符合率100%,且测序结果显示目标序列正确。结论 本研究建立的Allglo探针法检测GI和GII型诺如病毒技术特异性好,灵敏度高,可用于感染性腹泻暴发中诺如病毒的快速筛查。

     

    Abstract: Objective To develop a multiplex real-time reverse transcription-PCR(RT-PCR) assay for rapid and simultaneous detection of norovirus genogroup I(GI) and genogroup II(GII) with Allglo probe.Methods Specific primers and Allglo probes were designed according to open reading frame 1(ORF1) and open reading frame 2(ORF2) target genes of norovirus GI and GII.The one-step real-time RT-PCR reaction system was established by optimizing reaction conditions.The specificity,anti-interference,and sensitivity of the multiplex real time RT-PCR assay were estimated and the assay was further validated with sequencing analyses of 96 clinical stool specimens.Results The results showed that the assay possessed high specificity for norovirus detection and without any evident cross-reaction with other viruses,including rotavirus,astrovirus and adenovirus.The detection limit of multiplex real-time RT-PCR assay for norovirus GI and GII were 10 copies /μL.Ninety-six clinical stool specimens were detected by both multiplex real-time RT-PCR assay and single real-time RT-PCR assay,with the matched results of 100%,and the results of sequencing analysis of these samples showed that the target sequence was correct.Conclusion The multiplex real-time RT-PCR assay by Allglo probe for the detection of norovirus GI and GII,with high specificity and sensitivity,was successfully established and the detection results of clinical specimems demonstrated that the method is useful for rapid screening of norovirus in outbreaks of acute gastroenteritis.

     

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